PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G022000.1
Common NameB456_003G099900, B456_010G022000, LOC105773812, LOC105788444
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 407aa    MW: 46548.1 Da    PI: 7.5633
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G022000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016153176123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         y C+ Cg+ ++++ +Lk+H +  H
  Gorai.010G022000.1 153 YICGVCGRKCKTNLDLKKHFKQlH 176
                         89*****************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10105.3E-673143IPR029060PIN domain-like
PROSITE profilePS5015710.575153181IPR007087Zinc finger, C2H2
PROSITE patternPS000280155176IPR007087Zinc finger, C2H2
CDDcd061671.01E-12182307No hitNo description
Gene3DG3DSA:3.40.50.10105.3E-6238294IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MSSLCNSLKS LHVNPTFFPT KPELPFSFSL SPISAPPFKS KSSPTRCRLT VKAEANAVEI  60
DMVRNKQGVY APKQKKVVVL WDLDNKPPRG PPYEAALALK RVAEKFGEVV DMSAYANRHA  120
FVHLPQWVLQ ERRERRSLDI LERKGIVKPD EPYICGVCGR KCKTNLDLKK HFKQLHERER  180
QKKLNRMKSL KGKKRQRFKE RFISGNHKYN EAARSIIKPK IGYGLASELR RAGVYVKTVE  240
DKPQAADWAL KRQMQHSMSR GIDWLFLVSD DKDFVEMLRR AREADLGTVV VGDWDRGLGR  300
HADLWVSWVE VENGEVSEKD LVPKRKRMSS DDGLFSVSEF DGENISIGEL DGVANELLVG  360
RNEYGGMMIS VFSEDEDEWD IEEVGDEDYL LDGSEDEMIF EEDGYY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451405.10.0PREDICTED: uncharacterized protein LOC105773812
RefseqXP_012470807.10.0PREDICTED: uncharacterized protein LOC105788444
TrEMBLA0A0D2RJU70.0A0A0D2RJU7_G
STRINGPOPTR_0014s02520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-177C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]